Gluten-Free Cheesecake Cupcakes

  4.9 – 21 reviews  • Cheesecake Recipes

I made the decision to attempt to develop a gluten-free cheesecake cupcake recipe because a large portion of my family is gluten intolerant. I’ve tried a lot of various recipes before finding one that I really like, and I’m sure you all will, too. It is delicious either simply or topped with whipped cream, chocolate ganache, fruits, and more. Have fun baking!

Prep Time: 15 mins
Cook Time: 32 mins
Additional Time: 2 hrs 20 mins
Total Time: 3 hrs 7 mins
Servings: 12
Yield: 12 mini cheesecakes

Ingredients

  1. cooking spray
  2. 1 cup gluten-free flour blend (such as Namaste Perfect Flour Blend)
  3. 1 cup chopped pecans
  4. 7 tablespoons butter, melted, or more as needed
  5. ¼ cup packed brown sugar
  6. 3 (8 ounce) packages cream cheese, at room temperature
  7. ⅔ cup sugar, or more to taste
  8. ⅛ teaspoon salt
  9. 3 eggs
  10. 1 ½ teaspoons vanilla extract
  11. ½ teaspoon lemon extract, or more to taste

Instructions

  1. Preheat oven to 350 degrees F (175 degrees C). Grease a muffin tin with cooking spray.
  2. Mix flour, pecans, butter, and brown sugar together in a bowl until mixture has a sandy texture. Drop a heaping tablespoon of the mixture into the bottom of each muffin cup; press to create a flat and even crust.
  3. Bake in the preheated oven until crust is dry, about 12 minutes. Reduce oven temperature to 300 degrees F (150 degrees C).
  4. Beat cream cheese in a large bowl with an electric mixer on low speed until very creamy. Add sugar and salt; mix well. Beat in eggs one at a time until smooth. Beat in vanilla extract and lemon extract.
  5. Pour cream cheese mixture evenly over each crust.
  6. Bake cheesecakes in the preheated oven until set, about 20 minutes. Let cool completely, about 20 minutes. Cover and refrigerate until firm, at least 2 hours.
  7. Substitute lemon zest for the lemon extract if desired.

Nutrition Facts

Calories 442 kcal
Carbohydrate 27 g
Cholesterol 126 mg
Dietary Fiber 2 g
Protein 8 g
Saturated Fat 18 g
Sodium 257 mg
Sugars 17 g
Fat 35 g
Unsaturated Fat 0 g

Reviews

Amanda Padilla
I made this for Bible study today. I followed the recipe exact except I used a full heaping teaspoon of lemon extract and we didn’t taste the lemon in it. Next time I will use lemon zest too. Everyone loved it, and my husband who does not like anything gluten free scarfed 3 of them. I made 18 full sized cupcakes. Everyone raved about the crust and thought I used Graham cracker crust. Thank you for an amazing dish!
Jason Trujillo
These were delicious, but the recipe makes a lot more than 12 mini cupcakes! I made 24 mini cupcakes and had plenty of the cheesecake mixture left over, so I put it in a pie pan.
Ellen Escobar
Thank you so much for this recipe! I love finding gluten free recipes for my brother’s family that the rest of us prefer over anything else. Like the description says, picking toppings is the fun part.
Timothy Wallace
Love this
Mario Nguyen
I made these last night for a gluten-free dessert. OMG! I love the base with the pecan flavour. Husband prefers these to graham cracker base. I did make 18 instead of 12 with muffin liners.
Rachel White
Delicious! Made mine in cupcake wrappers. Added a strawberry sauce on top just before serving. The crust was awesome! Held together without crumbling. Used 1 tablespoon per cupcake wrapper and made 24.
Joseph Thomas
The crust was a little dry, will use more nuts next time.
Jessica Rodriguez
I made it in a 2/3 quantity, used Bobs Red Mill baking mix. Topped with cherry pie filling. They are wonderful!
Andrew Franklin
Delicious and so easy! I used muffin cups and put a little Leon icing flower on top. Great reviews from friends
James Moreno
For someone who’s had trouble with Gluten Free and cheesecake recipes, these turned out great! I agree that they can be served to the whole crowd. I am not a GF person, but my son is. We both loved these. I finally put a thermometer in my oven, and found that it runs hot, so I adjusted accordingly. The only other changes I made was that I omitted the lemon, and used cupcake liners. We put a few strawberries on top and they were truly delicious. Thank you for the recipe, especially the crust!
David Miller
This is delicious! I have two friends with Celiac Disease & they raved about this dessert! This is a fantastic recipe. I followed the recipe exact. Tummy!
Joshua Bishop
Big hit at the dinner party! Both cheesecake and crust were yummy. But they needed a little something on top. I made a lemon glaze, and drizzled over the top. Could also do another cheesecake like topping to make it colorful
Harold Smith
Just add a sour cream topping or fruit topping.
Ronald Michael
These were easy and delicious. They looked great too. I put some cherries on top of half and then put on the whipped cream. I will make these again. The recipe made about 24 cheesecakes.
Tyler Barnett
These were so delicious, I made 2 batches instead of one gluten free and one traditional.
Gerald Little
It was good.
Melvin Jackson
awesome recipe. definitely a Keeper. next time I’ll probably grind the nuts finer.
Taylor Weaver
These were simply amazing! A keeper for sure!
Scott Johnson
My rating is based solely on the crust. It is delicious! I followed the recipe exactly but cooked it a little differently. I used chopped pecans, but put them in the food processor anyway and chopped until the pieces were pretty small, but not floury. I placed cupcake liners in the muffin pans and patted down the crust mixture into the bottom of the liner. I probably used a little less than a tablespoon per liner. There was plenty to make 24 individual cheesecakes. I cooked them at the same temperature, but added a few minutes to the time. For the cheesecake part I used the old recipe that has vanilla wafers as a crust except I used half a teaspoon vanilla and half a teaspoon lemon extract (got the idea from this recipe). I also used dairy free cream cheese. People could not believe that it was a gluten free, dairy free dessert because it was so good.
Aaron Taylor
I did half pecans, half regular peanuts, it was good. I wanted to firing em up good but the chunks actually were better
Jennifer Winters
Forget my previous review. Obviously, I cannot read! These are GREAT!

 

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